Detailed information of SNP:
|
SNP ID:
sf0719200001(Gbrowse)
Chromosome: chr07 Position: 19200001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.85% | 49.15% |
| All Indica | 798 | 15.29% | 84.71% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 7.20% | 92.80% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719200001 | G->A | INTERGENIC | None |