Detailed information of SNP:
|
SNP ID:
sf0719201663(Gbrowse)
Chromosome: chr07 Position: 19201663 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.97% | 33.03% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 96.52% | 3.48% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719201663 | C->G | INTERGENIC | None |