Detailed information of SNP:
|
SNP ID:
sf0719205080(Gbrowse)
Chromosome: chr07 Position: 19205080 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 67.86% | 32.14% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 20.72% | 79.28% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719205080 | C->T | INTERGENIC | None |