Detailed information of SNP:
|
SNP ID:
sf0719205544(Gbrowse)
Chromosome: chr07 Position: 19205544 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.46% | 46.54% |
| All Indica | 798 | 79.57% | 20.43% |
| All Japonica | 496 | 19.15% | 80.85% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719205544 | G->A | INTERGENIC | None |