Detailed information of SNP:
|
SNP ID:
sf0719206682(Gbrowse)
Chromosome: chr07 Position: 19206682 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.42% | 43.58% |
| All Indica | 798 | 84.71% | 15.29% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 60.95% | 39.05% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719206682 | G->A | INTERGENIC | None |