Detailed information of SNP:
|
SNP ID:
sf0719207980(Gbrowse)
Chromosome: chr07 Position: 19207980 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 90.42% | 9.58% |
| All Indica | 798 | 90.10% | 9.90% |
| All Japonica | 495 | 94.75% | 5.25% |
| Aus | 20 | 5.00% | 95.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 2 | 0.00% | 100.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719207980 | C->A | INTERGENIC | None |