Detailed information of SNP:
|
SNP ID:
sf0719208831(Gbrowse)
Chromosome: chr07 Position: 19208831 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1294 | 61.98% | 38.02% |
| All Indica | 684 | 87.72% | 12.28% |
| All Japonica | 493 | 19.88% | 80.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 318 | 90.25% | 9.75% |
| Indica II | 177 | 88.70% | 11.30% |
| Indica Intermediate | 189 | 82.54% | 17.46% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 67 | 32.84% | 67.16% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 63.89% | 36.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719208831 | C->T | INTERGENIC | None |