Detailed information of SNP:
|
SNP ID:
sf0719222583(Gbrowse)
Chromosome: chr07 Position: 19222583 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 55.94% | 44.06% |
| All Indica | 761 | 22.73% | 77.27% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 13.73% | 86.27% |
| Indica II | 197 | 17.77% | 82.23% |
| Indica Intermediate | 207 | 43.00% | 57.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719222583 | C->A | INTERGENIC | None |