Detailed information of SNP:
|
SNP ID:
sf0719226908(Gbrowse)
Chromosome: chr07 Position: 19226908 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.12% | 31.88% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 496 | 20.56% | 79.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719226908 | G->T | LOC_Os07g32340(LOC_Os07g32340.3) | INTRON |
| sf0719226908 | G->T | LOC_Os07g32340(LOC_Os07g32340.1) | INTRON |
| sf0719226908 | G->T | LOC_Os07g32340(LOC_Os07g32340.2) | INTRON |