Detailed information of SNP:
|
SNP ID:
sf0719230710(Gbrowse)
Chromosome: chr07 Position: 19230710 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 60.32% | 39.68% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719230710 | A->G | LOC_Os07g32350(LOC_Os07g32350.2) | UTR_3_PRIME |
| sf0719230710 | A->G | LOC_Os07g32350(LOC_Os07g32350.1) | UTR_3_PRIME |