Detailed information of SNP:
|
SNP ID:
sf0719241573(Gbrowse)
Chromosome: chr07 Position: 19241573 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.42% | 49.58% |
| All Indica | 798 | 15.16% | 84.84% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 6.93% | 93.07% |
| Indica II | 213 | 6.10% | 93.90% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719241573 | G->A | INTERGENIC | None |