Detailed information of SNP:
|
SNP ID:
sf0719245591(Gbrowse)
Chromosome: chr07 Position: 19245591 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 51.73% | 48.27% |
| All Indica | 799 | 17.27% | 82.73% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719245591 | A->G | LOC_Os07g32380(LOC_Os07g32380.1) | INTRON |