Detailed information of SNP:
|
SNP ID:
sf0719255116(Gbrowse)
Chromosome: chr07 Position: 19255116 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.74% | 43.26% |
| All Indica | 798 | 84.71% | 15.29% |
| All Japonica | 496 | 19.96% | 80.04% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719255116 | C->A | LOC_Os07g32390(LOC_Os07g32390.1) | INTRON |