Detailed information of SNP:
|
SNP ID:
sf0719258499(Gbrowse)
Chromosome: chr07 Position: 19258499 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 95.14% | 4.86% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719258499 | T->C | LOC_Os07g32400(LOC_Os07g32400.2) | Non-Synonymous SNP |
| sf0719258499 | T->C | LOC_Os07g32400(LOC_Os07g32400.1) | Non-Synonymous SNP |