Detailed information of SNP:
|
SNP ID:
sf0719258699(Gbrowse)
Chromosome: chr07 Position: 19258699 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.88% | 49.12% |
| All Indica | 799 | 15.64% | 84.36% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 7.47% | 92.53% |
| Indica II | 213 | 6.57% | 93.43% |
| Indica Intermediate | 211 | 39.34% | 60.66% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719258699 | C->A | LOC_Os07g32400(LOC_Os07g32400.2) | INTRON |
| sf0719258699 | C->A | LOC_Os07g32400(LOC_Os07g32400.1) | INTRON |