Detailed information of SNP:
|
SNP ID:
sf0719270745(Gbrowse)
Chromosome: chr07 Position: 19270745 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.61% | 47.39% |
| All Indica | 798 | 18.42% | 81.58% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 8.27% | 91.73% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 210 | 41.90% | 58.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719270745 | C->T | INTERGENIC | None |