Detailed information of SNP:
|
SNP ID:
sf0719273786(Gbrowse)
Chromosome: chr07 Position: 19273786 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.14% | 41.86% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719273786 | G->C | LOC_Os07g32406(LOC_Os07g32406.1) | INTRON |