Detailed information of SNP:
|
SNP ID:
sf0719273992(Gbrowse)
Chromosome: chr07 Position: 19273992 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.96% | 36.04% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 497 | 19.92% | 80.08% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719273992 | T->G | LOC_Os07g32406(LOC_Os07g32406.1) | INTRON |