Detailed information of SNP:
|
SNP ID:
sf0719277919(Gbrowse)
Chromosome: chr07 Position: 19277919 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.73% | 48.27% |
| All Indica | 797 | 16.81% | 83.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 6.93% | 93.07% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719277919 | C->T | LOC_Os07g32412(LOC_Os07g32412.2) | INTRON |