Detailed information of SNP:
|
SNP ID:
sf0719281443(Gbrowse)
Chromosome: chr07 Position: 19281443 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 85.34% | 14.66% |
| All Indica | 799 | 88.24% | 11.76% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719281443 | T->C | LOC_Os07g32420(LOC_Os07g32420.1) | INTRON |
| sf0719281443 | T->C | LOC_Os07g32420(LOC_Os07g32420.3) | INTRON |
| sf0719281443 | T->C | LOC_Os07g32420(LOC_Os07g32420.2) | INTRON |