Detailed information of SNP:
|
SNP ID:
sf0719296474(Gbrowse)
Chromosome: chr07 Position: 19296474 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.42% | 41.58% |
| All Indica | 799 | 83.60% | 16.40% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719296474 | A->G | LOC_Os07g32430(LOC_Os07g32430.1) | INTRON |