Detailed information of SNP:
|
SNP ID:
sf0719296980(Gbrowse)
Chromosome: chr07 Position: 19296980 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.20% | 9.80% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719296980 | C->T | LOC_Os07g32430(LOC_Os07g32430.1) | Non-Synonymous SNP |