Detailed information of SNP:
|
SNP ID:
sf0719301464(Gbrowse)
Chromosome: chr07 Position: 19301464 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.42% | 41.58% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719301464 | C->T | LOC_Os07g32440(LOC_Os07g32440.1) | Non-Synonymous SNP |