Detailed information of SNP:
|
SNP ID:
sf0719301954(Gbrowse)
Chromosome: chr07 Position: 19301954 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.99% | 41.01% |
| All Indica | 799 | 83.60% | 16.40% |
| All Japonica | 497 | 15.29% | 84.71% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719301954 | T->C | INTERGENIC | None |