Detailed information of SNP:
|
SNP ID:
sf0719303074(Gbrowse)
Chromosome: chr07 Position: 19303074 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 52.86% | 47.14% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 61.90% | 38.10% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719303074 | C->A | INTERGENIC | None |