Detailed information of SNP:
|
SNP ID:
sf0719303251(Gbrowse)
Chromosome: chr07 Position: 19303251 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 90.52% | 9.48% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 76.09% | 23.91% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719303251 | G->T | INTERGENIC | None |