Detailed information of SNP:
|
SNP ID:
sf0719305119(Gbrowse)
Chromosome: chr07 Position: 19305119 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 52.19% | 47.81% |
| All Indica | 794 | 82.12% | 17.88% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 209 | 59.81% | 40.19% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719305119 | G->A | LOC_Os07g32450(LOC_Os07g32450.1) | INTRON |