Detailed information of SNP:
|
SNP ID:
sf0719306670(Gbrowse)
Chromosome: chr07 Position: 19306670 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 65.96% | 34.04% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719306670 | C->A | LOC_Os07g32450(LOC_Os07g32450.1) | INTRON |