Detailed information of SNP:
|
SNP ID:
sf0719315527(Gbrowse)
Chromosome: chr07 Position: 19315527 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.90% | 45.10% |
| All Indica | 798 | 86.22% | 13.78% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719315527 | G->A | INTERGENIC | None |