Detailed information of SNP:
|
SNP ID:
sf0719315848(Gbrowse)
Chromosome: chr07 Position: 19315848 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1201 | 66.36% | 33.64% |
| All Indica | 783 | 84.93% | 15.07% |
| All Japonica | 300 | 16.00% | 84.00% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 203 | 64.53% | 35.47% |
| Temperate Japonica | 171 | 24.56% | 75.44% |
| Tropical Japonica | 82 | 1.22% | 98.78% |
| Japonica Intermediate | 47 | 10.64% | 89.36% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719315848 | G->A | INTERGENIC | None |