Detailed information of SNP:
|
SNP ID:
sf0719316466(Gbrowse)
Chromosome: chr07 Position: 19316466 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 51.31% | 48.69% |
| All Indica | 793 | 80.45% | 19.55% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 371 | 91.37% | 8.63% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 209 | 58.85% | 41.15% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719316466 | G->A | INTERGENIC | None |