Detailed information of SNP:
|
SNP ID:
sf0719316827(Gbrowse)
Chromosome: chr07 Position: 19316827 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 85.65% | 14.35% |
| All Indica | 790 | 89.49% | 10.51% |
| All Japonica | 496 | 81.45% | 18.55% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 205 | 74.15% | 25.85% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719316827 | G->A | INTERGENIC | None |