Detailed information of SNP:
|
SNP ID:
sf0719332171(Gbrowse)
Chromosome: chr07 Position: 19332171 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.88% | 8.12% |
| All Indica | 797 | 88.21% | 11.79% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 71.29% | 28.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719332171 | G->A | INTERGENIC | None |