Detailed information of SNP:
|
SNP ID:
sf0719337232(Gbrowse)
Chromosome: chr07 Position: 19337232 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 50.64% | 49.36% |
| All Indica | 794 | 83.63% | 16.37% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719337232 | C->T | INTERGENIC | None |