Detailed information of SNP:
|
SNP ID:
sf0719337233(Gbrowse)
Chromosome: chr07 Position: 19337233 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 92.17% | 7.83% |
| All Indica | 797 | 88.33% | 11.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719337233 | A->T | INTERGENIC | None |