Detailed information of SNP:
|
SNP ID:
sf0719338725(Gbrowse)
Chromosome: chr07 Position: 19338725 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 90.31% | 9.69% |
| All Indica | 795 | 85.28% | 14.72% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 207 | 67.15% | 32.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719338725 | A->G | INTERGENIC | None |