Detailed information of SNP:
|
SNP ID:
sf0719347457(Gbrowse)
Chromosome: chr07 Position: 19347457 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 88.90% | 11.10% |
| All Indica | 789 | 82.13% | 17.87% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 370 | 88.11% | 11.89% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 206 | 65.53% | 34.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719347457 | G->A | INTERGENIC | None |