Detailed information of SNP:
|
SNP ID:
sf0719350041(Gbrowse)
Chromosome: chr07 Position: 19350041 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.99% | 10.01% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 67.14% | 32.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719350041 | G->T | INTERGENIC | None |