Detailed information of SNP:
|
SNP ID:
sf0719368043(Gbrowse)
Chromosome: chr07 Position: 19368043 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.36% | 42.64% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719368043 | G->A | INTERGENIC | None |