Detailed information of SNP:
SNP ID:
sf0719372297(Gbrowse)
Chromosome: chr07 Position: 19372297 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1394 | 94.76% | 5.24% |
All Indica | 797 | 100.00% | 0.00% |
All Japonica | 474 | 85.65% | 14.35% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 211 | 100.00% | 0.00% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 334 | 98.80% | 1.20% |
Tropical Japonica | 74 | 39.19% | 60.81% |
Japonica Intermediate | 66 | 71.21% | 28.79% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0719372297 | C->T | INTERGENIC | None |