Detailed information of SNP:
|
SNP ID:
sf0719376511(Gbrowse)
Chromosome: chr07 Position: 19376511 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.80% | 45.20% |
| All Indica | 797 | 26.47% | 73.53% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 24.33% | 75.67% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719376511 | C->T | INTERGENIC | None |