Detailed information of SNP:
|
SNP ID:
sf0719388697(Gbrowse)
Chromosome: chr07 Position: 19388697 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 82.49% | 17.51% |
| All Indica | 797 | 80.18% | 19.82% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 374 | 81.28% | 18.72% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 65.24% | 34.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719388697 | G->A | INTERGENIC | None |