Detailed information of SNP:
|
SNP ID:
sf0719394593(Gbrowse)
Chromosome: chr07 Position: 19394593 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.45% | 48.55% |
| All Indica | 797 | 27.10% | 72.90% |
| All Japonica | 496 | 83.67% | 16.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 21.60% | 78.40% |
| Indica II | 212 | 15.09% | 84.91% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719394593 | G->A | INTERGENIC | None |