Detailed information of SNP:
|
SNP ID:
sf0719396167(Gbrowse)
Chromosome: chr07 Position: 19396167 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 53.72% | 46.28% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 438 | 8.22% | 91.78% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 283 | 10.95% | 89.05% |
| Tropical Japonica | 88 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719396167 | G->A | INTERGENIC | None |