Detailed information of SNP:
|
SNP ID:
sf0719402118(Gbrowse)
Chromosome: chr07 Position: 19402118 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 83.23% | 16.77% |
| All Indica | 799 | 77.35% | 22.65% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 80.00% | 20.00% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719402118 | G->A | INTERGENIC | None |