Detailed information of SNP:
|
SNP ID:
sf0719412503(Gbrowse)
Chromosome: chr07 Position: 19412503 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 95.59% | 4.41% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 484 | 88.22% | 11.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 332 | 98.80% | 1.20% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 63 | 80.95% | 19.05% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719412503 | C->T | INTERGENIC | None |