Detailed information of SNP:
|
SNP ID:
sf0719431608(Gbrowse)
Chromosome: chr07 Position: 19431608 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 86.88% | 13.12% |
| All Indica | 775 | 96.26% | 3.74% |
| All Japonica | 475 | 82.74% | 17.26% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 369 | 98.92% | 1.08% |
| Indica II | 201 | 98.01% | 1.99% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 73 | 32.88% | 67.12% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719431608 | A->G | INTERGENIC | None |