Detailed information of SNP:
|
SNP ID:
sf0719439729(Gbrowse)
Chromosome: chr07 Position: 19439729 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.49% | 49.51% |
| All Indica | 798 | 83.83% | 16.17% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719439729 | G->A | LOC_Os07g32600(LOC_Os07g32600.1) | INTRON |