Detailed information of SNP:
|
SNP ID:
sf0719444004(Gbrowse)
Chromosome: chr07 Position: 19444004 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.46% | 37.54% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 496 | 21.37% | 78.63% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719444004 | C->T | LOC_Os07g32610(LOC_Os07g32610.1) | SNPs that introduce stop codons |
| sf0719444004 | C->T | LOC_Os07g32610(LOC_Os07g32610.2) | SNPs that introduce stop codons |