Detailed information of SNP:
|
SNP ID:
sf0719444883(Gbrowse)
Chromosome: chr07 Position: 19444883 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 53.00% | 47.00% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0719444883 | A->G | LOC_Os07g32610(LOC_Os07g32610.2) | INTRON |